Software

Tan J, Sinno T, Diamond SL. A parallel fluid-solid coupling model using LAMMPS and Palabos based on the immersed boundary method. Journal of Computational Science, March 2018; 25: 89-100.

GitHub of models for download

Lu Y, Lee MY, Zhu S, Sinno T, Diamond SL. Multiscale simulation of thrombus growth and vessel occlusion triggered by collagen/tissue factor using a data-driven model of combinatorial platelet signaling. Math Med Biol, Dec 11 2017; 34 (4): 523-546.

RAR file of models for download

Dolan AT, Diamond SL. Systems Modeling of Ca(2+) Homeostasis and Mobilization in Platelets Mediated by IP3 and Store-Operated Ca(2+) Entry. Biophys J, May 6 2014; 106 (9): 2049-2060.

ZIP file of models for download

Chatterjee MS, Denney WS, Jing HY, Diamond SL. Systems Biology of Coagulation Initiation: Kinetics of Thrombin Generation in Resting and Activated Human Blood. Plos Computational Biology 2010; 6 : 9

ZIP file of SBML models for download

Purvis JE, Chatterjee MS, Brass LF, Diamond SL. A molecular signaling model of platelet phosphoinositide and calcium regulation during homeostasis and P2Y1 activation. Blood 2008; 112 (10): 4069-4079

ZIP file of SBML models for download